hfsB protein (Caulobacter vibrioides CB15) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

hfsB

HfsB; Identified by Glimmer2; putative. (233 aa)

Predicted Functional Partners:

hfsC

0.945

hfsE

0.938

hfsD

0.918

hfsA

0.916

hfsF

0.786

hfsI

0.764

hfsH

0.742

hfaA

0.730

hfaB

0.730

hfsG

0.684

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
hfaA	hfaB	CC_2628	CC_2629	hfaA protein; Involved in attachment of the holdfast to the cell. The holdfast is a structure that allows the bacteria to firmly adheres to surfaces.	hfaB protein; Required for the attachment of the holdfast to the cell. May be involved in the positive regulation of hfaC.	0.951
hfaA	hfsA	CC_2628	CC_2431	hfaA protein; Involved in attachment of the holdfast to the cell. The holdfast is a structure that allows the bacteria to firmly adheres to surfaces.	HfsA; Identified by Glimmer2; putative.	0.732
hfaA	hfsB	CC_2628	CC_2430	hfaA protein; Involved in attachment of the holdfast to the cell. The holdfast is a structure that allows the bacteria to firmly adheres to surfaces.	HfsB; Identified by Glimmer2; putative.	0.730
hfaA	hfsC	CC_2628	CC_2429	hfaA protein; Involved in attachment of the holdfast to the cell. The holdfast is a structure that allows the bacteria to firmly adheres to surfaces.	HfsC; Identified by Glimmer2; putative.	0.550
hfaA	hfsD	CC_2628	CC_2432	hfaA protein; Involved in attachment of the holdfast to the cell. The holdfast is a structure that allows the bacteria to firmly adheres to surfaces.	HfsD; Identified by Glimmer2; putative.	0.733
hfaA	hfsE	CC_2628	CC_2425	hfaA protein; Involved in attachment of the holdfast to the cell. The holdfast is a structure that allows the bacteria to firmly adheres to surfaces.	HfsE; Identified by Glimmer2; putative.	0.517
hfaA	hfsF	CC_2628	CC_2426	hfaA protein; Involved in attachment of the holdfast to the cell. The holdfast is a structure that allows the bacteria to firmly adheres to surfaces.	HfsF; Identified by match to protein family HMM.	0.695
hfaA	hfsG	CC_2628	CC_2427	hfaA protein; Involved in attachment of the holdfast to the cell. The holdfast is a structure that allows the bacteria to firmly adheres to surfaces.	Identified by match to protein family HMM.	0.683
hfaA	hfsH	CC_2628	CC_2428	hfaA protein; Involved in attachment of the holdfast to the cell. The holdfast is a structure that allows the bacteria to firmly adheres to surfaces.	HfsH; Identified by match to PFAM protein family HMM PF01522.	0.731
hfaA	hfsI	CC_2628	CC_0499	hfaA protein; Involved in attachment of the holdfast to the cell. The holdfast is a structure that allows the bacteria to firmly adheres to surfaces.	HfsI; Identified by Glimmer2; putative.	0.511
hfaB	hfaA	CC_2629	CC_2628	hfaB protein; Required for the attachment of the holdfast to the cell. May be involved in the positive regulation of hfaC.	hfaA protein; Involved in attachment of the holdfast to the cell. The holdfast is a structure that allows the bacteria to firmly adheres to surfaces.	0.951
hfaB	hfsA	CC_2629	CC_2431	hfaB protein; Required for the attachment of the holdfast to the cell. May be involved in the positive regulation of hfaC.	HfsA; Identified by Glimmer2; putative.	0.927
hfaB	hfsB	CC_2629	CC_2430	hfaB protein; Required for the attachment of the holdfast to the cell. May be involved in the positive regulation of hfaC.	HfsB; Identified by Glimmer2; putative.	0.730
hfaB	hfsC	CC_2629	CC_2429	hfaB protein; Required for the attachment of the holdfast to the cell. May be involved in the positive regulation of hfaC.	HfsC; Identified by Glimmer2; putative.	0.842
hfaB	hfsD	CC_2629	CC_2432	hfaB protein; Required for the attachment of the holdfast to the cell. May be involved in the positive regulation of hfaC.	HfsD; Identified by Glimmer2; putative.	0.858
hfaB	hfsE	CC_2629	CC_2425	hfaB protein; Required for the attachment of the holdfast to the cell. May be involved in the positive regulation of hfaC.	HfsE; Identified by Glimmer2; putative.	0.515
hfaB	hfsF	CC_2629	CC_2426	hfaB protein; Required for the attachment of the holdfast to the cell. May be involved in the positive regulation of hfaC.	HfsF; Identified by match to protein family HMM.	0.898
hfaB	hfsG	CC_2629	CC_2427	hfaB protein; Required for the attachment of the holdfast to the cell. May be involved in the positive regulation of hfaC.	Identified by match to protein family HMM.	0.878
hfaB	hfsH	CC_2629	CC_2428	hfaB protein; Required for the attachment of the holdfast to the cell. May be involved in the positive regulation of hfaC.	HfsH; Identified by match to PFAM protein family HMM PF01522.	0.877
hfaB	hfsI	CC_2629	CC_0499	hfaB protein; Required for the attachment of the holdfast to the cell. May be involved in the positive regulation of hfaC.	HfsI; Identified by Glimmer2; putative.	0.728