STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2454Lipase/acylhydrolase, putative; Identified by match to protein family HMM. (340 aa)    
Predicted Functional Partners:
CC_2227
Identified by match to PFAM protein family HMM PF00759.
 
 
 0.770
CC_0543
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
   0.702
CC_0801
Mannanase, putative; Identified by match to protein family HMM.
 
     0.695
CC_3042
Endo-1,4-beta-xylanase; Identified by match to protein family HMM.
 
   
 0.622
CC_2455
Aminotransferase, class I; Identified by match to protein family HMM.
 
  
 0.620
CC_2357
Beta-xylosidase; Identified by match to protein family HMM.
  
    0.616
CC_2550
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.610
CC_0789
Glycosyl hydrolase, family 31; Identified by match to PFAM protein family HMM PF01055; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.604
CC_2802
Xylosidase/arabinosidase; Similar to GB:M55537 SP:P45982 PID:144166; identified by sequence similarity; putative; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.589
CC_2811
Alpha-glucuronidase; Similar to PID:1771832 GB:AE000512; identified by sequence similarity; putative; Belongs to the glycosyl hydrolase 67 family.
 
    0.541
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.