Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CC_2479Identified by match to PFAM protein family HMM PF00441. (344 aa)    
Predicted Functional Partners:
CC_2478
Identified by match to PFAM protein family HMM PF00441.
    0.993
CC_1310
Identified by match to PFAM protein family HMM PF00441.
 
     0.952
CC_2049
Identified by match to PFAM protein family HMM PF00441.
   
0.930
CC_1806
Identified by match to PFAM protein family HMM PF00441.
 
    
0.928
CC_2131
Identified by match to PFAM protein family HMM PF00441.
 
   
0.924
CC_1813
Identified by match to PFAM protein family HMM PF00378.
  
 0.877
CC_0947
Identified by match to PFAM protein family HMM PF00378.
  
 0.787
CC_0726
Electron transfer flavoprotein, alpha subunit; Identified by match to PFAM protein family HMM PF00766.
 
 
 0.780
CC_0353
Identified by match to PFAM protein family HMM PF00378.
 
  0.776
CC_0076
Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.
  
 0.764
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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