STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2530PsbAd protein; Identified by match to protein family HMM. (90 aa)    
Predicted Functional Partners:
CC_0024
Siroheme synthase-related protein; Similar to SP:P11098 GB:X14202 PID:581142 PID:606302 GB:U00096; identified by sequence similarity; putative.
  
  
 0.779
CC_0615
Nitrite reductase [NAD(P)H], large subunit; Identified by match to protein family HMM; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
 
 0.748
CC_3525
Ferredoxin reductase; Identified by match to protein family HMM.
  
 
 0.746
CC_2531
Identified by match to protein family HMM.
       0.551
CC_0617
NasA/NapA/NarB nitrate reductase, large subunit family protein; Identified by match to PFAM protein family HMM PF00384; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
  
 0.509
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
 
     0.500
CC_2533
4-hydroxyphenylpyruvate dioxygenase; Identified by match to protein family HMM.
 
   
 0.472
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.452
CC_0618
Siroheme synthase; Identified by match to PFAM protein family HMM PF00590.
  
  
 0.449
CC_1118
Sirohaem synthase; Identified by match to PFAM protein family HMM PF00590.
  
  
 0.424
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.