STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2575Identified by match to PFAM protein family HMM PF00378. (265 aa)    
Predicted Functional Partners:
CC_0715
3-hydroxybutyryl-CoA dehydrogenase; Identified by match to PFAM protein family HMM PF00725.
 0.987
CC_1967
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  0.954
CC_0076
Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.
0.856
CC_2478
Identified by match to PFAM protein family HMM PF00441.
   
 0.756
CC_1352
Identified by match to PFAM protein family HMM PF00378.
 
0.755
CC_0427
acyl-CoA dehydrogenase, putative; Identified by match to PFAM protein family HMM PF00441.
  
 0.752
CC_1798
acyl-CoA dehydrogenase; Identified by match to PFAM protein family HMM PF00441.
  
 0.752
CC_0690
Identified by match to PFAM protein family HMM PF00441.
   
 0.747
CC_2131
Identified by match to PFAM protein family HMM PF00441.
   
 0.747
CC_0080
Identified by match to PFAM protein family HMM PF00441.
   
 0.746
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.