CC_2579 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CC_2579

Identified by match to protein family HMM. (488 aa)

Predicted Functional Partners:

CC_2544

0.682

CC_2819

0.665

CC_1986

0.655

CC_0925

0.629

CC_0985

0.580

CC_1623

0.563

CC_2154

0.550

CC_2474

0.546

CC_1056

0.541

CC_0335

0.536

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CC_0335	CC_1623	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.724
CC_0335	CC_2579	TonB-dependent receptor; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.536
CC_0335	CC_2819	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor, putative; Identified by match to protein family HMM.	0.748
CC_0925	CC_1986	OmpA-related protein; Similar to SP:P38370 GB:S64103 PID:402804; identified by sequence similarity; putative.	Identified by match to protein family HMM.	0.446
CC_0925	CC_2154	OmpA-related protein; Similar to SP:P38370 GB:S64103 PID:402804; identified by sequence similarity; putative.	Dipeptidyl peptidase IV; Identified by match to PFAM protein family HMM PF00930.	0.548
CC_0925	CC_2544	OmpA-related protein; Similar to SP:P38370 GB:S64103 PID:402804; identified by sequence similarity; putative.	Aminopeptidase, putative; Similar to GP:3386478; identified by sequence similarity; putative.	0.451
CC_0925	CC_2579	OmpA-related protein; Similar to SP:P38370 GB:S64103 PID:402804; identified by sequence similarity; putative.	Identified by match to protein family HMM.	0.629
CC_0985	CC_2474	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.458
CC_0985	CC_2579	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM.	0.580
CC_1056	CC_1623	Hypothetical protein; Identified by Glimmer2; putative.	TonB-dependent receptor; Identified by match to protein family HMM.	0.437
CC_1056	CC_2579	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM.	0.541
CC_1056	CC_2819	Hypothetical protein; Identified by Glimmer2; putative.	TonB-dependent receptor, putative; Identified by match to protein family HMM.	0.575
CC_1623	CC_0335	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.724
CC_1623	CC_1056	TonB-dependent receptor; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.437
CC_1623	CC_1986	TonB-dependent receptor; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.431
CC_1623	CC_2154	TonB-dependent receptor; Identified by match to protein family HMM.	Dipeptidyl peptidase IV; Identified by match to PFAM protein family HMM PF00930.	0.475
CC_1623	CC_2544	TonB-dependent receptor; Identified by match to protein family HMM.	Aminopeptidase, putative; Similar to GP:3386478; identified by sequence similarity; putative.	0.496
CC_1623	CC_2579	TonB-dependent receptor; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.563
CC_1986	CC_0925	Identified by match to protein family HMM.	OmpA-related protein; Similar to SP:P38370 GB:S64103 PID:402804; identified by sequence similarity; putative.	0.446
CC_1986	CC_1623	Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.431