STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2611Identified by match to protein family HMM. (304 aa)    
Predicted Functional Partners:
CC_2614
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.693
CC_2613
Pyrazinamidase/nicotinamidase; Identified by match to PFAM protein family HMM PF01425.
  
 0.639
CC_1528
DNA helicase II; Identified by match to protein family HMM.
 
      0.586
CC_2615
Inosine-uridine preferring nucleoside hydrolase; Identified by match to PFAM protein family HMM PF01156.
  
    0.511
CC_2612
Hypothetical protein; Identified by Glimmer2; putative.
       0.507
CC_2610
Identified by match to PFAM protein family HMM PF00353.
  
    0.420
CC_2399
Transcriptional regulator, AraC family; Identified by match to protein family HMM.
 
      0.408
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.