CC_2633 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

CC_2633

Hypothetical protein; Identified by Glimmer2; putative. (334 aa)

Predicted Functional Partners:

CC_2635

0.981

CC_2634

0.959

CC_1832

0.724

CC_0610

0.679

CC_0611

0.656

CC_1831

0.656

CC_2636

0.588

CC_2637

0.588

cysC

0.580

CC_2632

0.538

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC_0610	CC_0611	CC_0610	CC_0611	Nitrate ABC transporter, permease protein; Identified by match to protein family HMM.	Nitrate ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.998
CC_0610	CC_1831	CC_0610	CC_1831	Nitrate ABC transporter, permease protein; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.837
CC_0610	CC_2633	CC_0610	CC_2633	Nitrate ABC transporter, permease protein; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.679
CC_0610	CC_2634	CC_0610	CC_2634	Nitrate ABC transporter, permease protein; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.930
CC_0610	CC_2635	CC_0610	CC_2635	Nitrate ABC transporter, permease protein; Identified by match to protein family HMM.	ABC transporter, permease protein, putative; Identified by match to protein family HMM.	0.704
CC_0610	cysC	CC_0610	CC_1482	Nitrate ABC transporter, permease protein; Identified by match to protein family HMM.	Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.	0.487
CC_0611	CC_0610	CC_0611	CC_0610	Nitrate ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	Nitrate ABC transporter, permease protein; Identified by match to protein family HMM.	0.998
CC_0611	CC_1832	CC_0611	CC_1832	Nitrate ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	ABC transporter, permease protein; Identified by match to protein family HMM.	0.879
CC_0611	CC_2633	CC_0611	CC_2633	Nitrate ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.656
CC_0611	CC_2635	CC_0611	CC_2635	Nitrate ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	ABC transporter, permease protein, putative; Identified by match to protein family HMM.	0.880
CC_0611	cysC	CC_0611	CC_1482	Nitrate ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.	0.558
CC_1831	CC_0610	CC_1831	CC_0610	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	Nitrate ABC transporter, permease protein; Identified by match to protein family HMM.	0.837
CC_1831	CC_1832	CC_1831	CC_1832	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	ABC transporter, permease protein; Identified by match to protein family HMM.	0.984
CC_1831	CC_2633	CC_1831	CC_2633	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.656
CC_1831	CC_2635	CC_1831	CC_2635	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	ABC transporter, permease protein, putative; Identified by match to protein family HMM.	0.870
CC_1831	cysC	CC_1831	CC_1482	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.	0.558
CC_1832	CC_0611	CC_1832	CC_0611	ABC transporter, permease protein; Identified by match to protein family HMM.	Nitrate ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.879
CC_1832	CC_1831	CC_1832	CC_1831	ABC transporter, permease protein; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.984
CC_1832	CC_2633	CC_1832	CC_2633	ABC transporter, permease protein; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.724
CC_1832	CC_2634	CC_1832	CC_2634	ABC transporter, permease protein; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.823