STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2642Choline dehydrogenase; Identified by match to PFAM protein family HMM PF00732. (555 aa)    
Predicted Functional Partners:
CC_0945
Oxidoreductase, GMC family; Identified by match to PFAM protein family HMM PF00732.
  
 
 
0.909
CC_1733
Aas bifunctional protein, putative; Identified by match to protein family HMM.
   
 
 0.804
CC_3031
Phospholipase C; Similar to GB:M30223 SP:P15713 GB:M59304 PID:151496 PID:151498; identified by sequence similarity; putative.
   
 
  0.802
CC_2641
Oxidoreductase, aldo/keto reductase family; Identified by match to protein family HMM.
 
    0.781
kup
Kup system potassium uptake protein; Transport of potassium into the cell; Belongs to the HAK/KUP transporter (TC 2.A.72) family.
      
 0.749
CC_1595
Transcriptional regulator KdpE; Identified by match to protein family HMM.
      
 0.731
CC_2082
Identified by match to protein family HMM; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
  
 0.731
proB
Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.
      
 0.730
proA
Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.
      
 0.703
CC_1639
Identified by match to protein family HMM.
   
 0.648
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.