CC_2643 protein (Caulobacter vibrioides CB15)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CC_2643

Identified by match to protein family HMM. (176 aa)

Predicted Functional Partners:

CC_3569

0.727

CC_3572

0.727

CC_2279

0.656

CC_0388

0.474

CC_0321

0.449

CC_2444

0.431

CC_2641

0.417

CC_2642

0.411

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CC_0321	CC_0388	Conserved hypothetical protein; Identified by Glimmer2; putative.	Dihydroorotase; Identified by match to PFAM protein family HMM PF00744.	0.443
CC_0321	CC_2643	Conserved hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM.	0.449
CC_0388	CC_0321	Dihydroorotase; Identified by match to PFAM protein family HMM PF00744.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.443
CC_0388	CC_2444	Dihydroorotase; Identified by match to PFAM protein family HMM PF00744.	Aspartate transcarbamoylase, pyrC' subunit; Identified by match to PFAM protein family HMM PF00744.	0.927
CC_0388	CC_2643	Dihydroorotase; Identified by match to PFAM protein family HMM PF00744.	Identified by match to protein family HMM.	0.474
CC_2279	CC_2643	Conserved hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM.	0.656
CC_2444	CC_0388	Aspartate transcarbamoylase, pyrC' subunit; Identified by match to PFAM protein family HMM PF00744.	Dihydroorotase; Identified by match to PFAM protein family HMM PF00744.	0.927
CC_2444	CC_2643	Aspartate transcarbamoylase, pyrC' subunit; Identified by match to PFAM protein family HMM PF00744.	Identified by match to protein family HMM.	0.431
CC_2641	CC_2642	Oxidoreductase, aldo/keto reductase family; Identified by match to protein family HMM.	Choline dehydrogenase; Identified by match to PFAM protein family HMM PF00732.	0.781
CC_2641	CC_2643	Oxidoreductase, aldo/keto reductase family; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.417
CC_2642	CC_2641	Choline dehydrogenase; Identified by match to PFAM protein family HMM PF00732.	Oxidoreductase, aldo/keto reductase family; Identified by match to protein family HMM.	0.781
CC_2642	CC_2643	Choline dehydrogenase; Identified by match to PFAM protein family HMM PF00732.	Identified by match to protein family HMM.	0.411
CC_2643	CC_0321	Identified by match to protein family HMM.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.449
CC_2643	CC_0388	Identified by match to protein family HMM.	Dihydroorotase; Identified by match to PFAM protein family HMM PF00744.	0.474
CC_2643	CC_2279	Identified by match to protein family HMM.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.656
CC_2643	CC_2444	Identified by match to protein family HMM.	Aspartate transcarbamoylase, pyrC' subunit; Identified by match to PFAM protein family HMM PF00744.	0.431
CC_2643	CC_2641	Identified by match to protein family HMM.	Oxidoreductase, aldo/keto reductase family; Identified by match to protein family HMM.	0.417
CC_2643	CC_2642	Identified by match to protein family HMM.	Choline dehydrogenase; Identified by match to PFAM protein family HMM PF00732.	0.411
CC_2643	CC_3569	Identified by match to protein family HMM.	Carbonic anhydrase family protein; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.	0.727
CC_2643	CC_3572	Identified by match to protein family HMM.	Carbonic anhydrase; Identified by match to protein family HMM.	0.727