Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CC_2685Conjugal transfer protein TrbI; Identified by match to PFAM protein family HMM PF00465. (418 aa)    
Predicted Functional Partners:
CC_2686
Conjugal transfer protein TrbG; Identified by match to protein family HMM.
 0.999
CC_2687
Conjugal transfer protein TrbF; Identified by match to protein family HMM.
  
 0.995
CC_2419
Type IV secretion system protein B4, putative; Similar to GP:6007531; identified by sequence similarity; putative.
 
 
 0.987
CC_2421
Type IV secretion system protein B9, putative; Similar to GP:6249470; identified by sequence similarity; putative.
 
 
 0.974
CC_2683
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.949
CC_2418
Type IV secretion system protein B3, putative; Similar to GP:6249463; identified by sequence similarity; putative.
  
 
 0.946
CC_2422
Type IV secretion system protein B10, putative; Similar to SP:P17800 PID:154792 PID:39162; identified by sequence similarity; putative.
  
  
 
0.927
CC_2420
Hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.923
CC_2684
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.794
CC_2682
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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