STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2710Hypothetical protein; Identified by Glimmer2; putative. (828 aa)    
Predicted Functional Partners:
CC_2709
TonB-dependent receptor; Identified by match to protein family HMM.
 
     0.807
CC_3246
Identified by match to PFAM protein family HMM PF00326.
  
     0.724
CC_2154
Dipeptidyl peptidase IV; Identified by match to PFAM protein family HMM PF00930.
  
     0.665
CC_2012
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.581
CC_1142
TonB-dependent receptor, putative; Similar to GP:9949393; identified by sequence similarity; putative.
  
     0.513
CC_2708
Transcriptional regulator, putative; Similar to SP:P23485 GB:M63115 PID:145931 PID:537133 GB:U00096; identified by sequence similarity; putative.
 
     0.503
CC_0815
TonB-dependent receptor, putative; Similar to GP:2281664; identified by sequence similarity; putative.
  
     0.495
CC_2707
RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.475
CC_3337
Peptidase, M20/M25/M40 family; Identified by match to protein family HMM.
  
    0.472
CC_1958
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM.
  
     0.440
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.