STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2740IS1111A/IS1328/IS1533 family transposase; Identified by match to protein family HMM. (354 aa)    
Predicted Functional Partners:
CC_2739
Transposase, putative; Identified by match to protein family HMM.
 
   
 0.903
ubiG
3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.
      
 0.759
CC_2743
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.702
CC_0273
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.561
CC_1796
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.561
CC_2742
IS511, transposase OrfB; Similar to PID:1103858; identified by sequence similarity; putative.
  
  
 0.561
CC_2741
IS511, transposase OrfA; Identified by match to PFAM protein family HMM PF01527.
  
  
 0.547
CC_2738
Hypothetical protein; Identified by Glimmer2; putative.
       0.530
CC_2386
HipA-related protein; Similar to GB:M61242 SP:P23874 PID:146354 GB:U00096 PID:1742484; identified by sequence similarity; putative.
  
    0.464
CC_2735
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
    0.440
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.