STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2793Amine oxidase, flavin-containing; Identified by match to PFAM protein family HMM PF01593. (541 aa)    
Predicted Functional Partners:
CC_2792
Identified by match to protein family HMM.
 
  
 0.945
CC_0419
Aldehyde dehydrogenase; Identified by match to protein family HMM.
    
 0.903
CC_1216
Aldehyde dehydrogenase; Identified by match to protein family HMM; Belongs to the aldehyde dehydrogenase family.
    
 0.903
CC_2396
Benzyl-alcohol dehydrogenase; Identified by match to protein family HMM.
   
 
  0.901
CC_2516
Alcohol dehydrogenase, class III; Identified by match to protein family HMM; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
     
  0.900
CC_3029
Alcohol dehydrogenase class III; Identified by match to protein family HMM.
   
 
  0.900
CC_1315
Lactoylglutathione lyase, putative; Identified by match to PFAM protein family HMM PF00903.
     
  0.800
CC_1089
Transcriptional regulator, putative; Identified by match to protein family HMM.
 
   
 0.795
lldD
L-lactate dehydrogenase; Catalyzes the conversion of L-lactate to pyruvate. Is coupled to the respiratory chain; Belongs to the FMN-dependent alpha-hydroxy acid dehydrogenase family.
   
  
 0.748
CC_2072
Identified by match to PFAM protein family HMM PF00850.
   
 0.638
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.