STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2799Peptidyl-prolyl cis-trans isomerase, FKBP-type; Identified by match to PFAM protein family HMM PF00254. (114 aa)    
Predicted Functional Partners:
CC_1031
Hypothetical protein; Identified by Glimmer2; putative.
   
 0.870
pssZ
PssZ; Identified by Glimmer2; putative.
    
 0.808
CC_2226
EF hand domain protein; Identified by match to protein family HMM.
   
 0.726
CC_2752
EF hand domain protein; Identified by match to protein family HMM.
   
 0.726
infA
Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
   
   0.666
dnaK
dnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.
   
 0.573
CC_1476
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
 0.573
CC_2800
Hypothetical protein; Identified by Glimmer2; putative.
       0.544
CC_2058
Hypothetical protein; Identified by Glimmer2; putative.
    
 0.511
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.485
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.