STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2813Transcriptional regulator, GntR family; Identified by match to protein family HMM. (249 aa)    
Predicted Functional Partners:
CC_0884
Transcriptional regulator, putative; Identified by match to protein family HMM.
 
  
 0.741
CC_2661
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
 
  
 0.730
CC_2392
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
 
  
 0.712
CC_1776
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
 
  
 0.673
CC_0988
Hexuronate transporter; Identified by match to protein family HMM.
 
   
 0.578
CC_2812
Mandelate racemase / muconate lactonizing enzyme family; Catalyzes the dehydration of D-mannonate. Has no detectable activity with a panel of 70 other acid sugars (in vitro).
     
 0.517
CC_2814
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.494
CC_0962
Histidine utilization repressor; Identified by match to protein family HMM.
  
    0.478
CC_0536
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
  
    0.462
CC_0445
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
  
    0.454
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.