STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2821Hypothetical protein; Identified by Glimmer2; putative. (243 aa)    
Predicted Functional Partners:
CC_2822
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
CC_3461
TonB-dependent receptor; Identified by match to protein family HMM.
  
     0.665
CC_0335
TonB-dependent receptor; Identified by match to protein family HMM.
  
     0.653
CC_2819
TonB-dependent receptor, putative; Identified by match to protein family HMM.
  
    0.539
CC_1970
TonB-dependent receptor; Similar to GP:9946027; identified by sequence similarity; putative.
  
     0.474
CC_1079
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.467
CC_1722
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.463
CC_0454
TonB-dependent receptor; Similar to GP:9948370; identified by sequence similarity; putative.
  
     0.448
hemF
Coproporphyrinogen III oxidase, aerobic; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
   
  
 0.443
CC_0892
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.438
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.