STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2849Conserved hypothetical protein; Identified by Glimmer2; putative. (389 aa)    
Predicted Functional Partners:
CC_1052
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM.
 
     0.761
CC_1653
PQQ enzyme repeat family protein; Identified by match to protein family HMM.
  
    0.647
CC_3590
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.619
CC_0302
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
 
    0.581
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.556
CC_2250
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.548
CC_2934
3-deoxy-manno-octulosonate cytidylyltransferase; Identified by match to TIGR protein family HMM TIGR00466.
 
   
 0.503
HolA
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.480
CC_3312
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.456
CC_2301
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.450
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.