STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2871Thioredoxin reductase; Identified by match to protein family HMM. (348 aa)    
Predicted Functional Partners:
CC_3539
Thioredoxin; Identified by match to protein family HMM; Belongs to the thioredoxin family.
 
 0.996
CC_2918
Alkyl hydroperoxide reductase, subunit c; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
 
 0.938
CC_1860
Aminotransferase, class V; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 
 0.922
CC_3168
Methionine-gamma-lyase; Identified by match to PFAM protein family HMM PF01053.
   
 
 0.910
CC_0110
Thioredoxin; Identified by match to protein family HMM.
 
 
 0.869
CC_2394
Vanillate O-demethylase, reductase subunit; Identified by match to protein family HMM.
   
 
 0.798
fdxB
Ferredoxin, 2Fe-2S; Identified by match to protein family HMM.
   
 
 0.729
CC_2210
Thiol:disulfide interchange protein, putative; Identified by match to protein family HMM.
  
 
 0.722
CC_3674
Thiol:disulfide interchange protein CycY; Identified by match to protein family HMM.
  
 
 0.722
CC_3726
Molybdopterin biosynthesis protein MoeB; Identified by match to PFAM protein family HMM PF00899.
  
  
 0.679
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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