STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2882Hypothetical protein; Identified by Glimmer2; putative. (147 aa)    
Predicted Functional Partners:
CC_0360
Ornithine decarboxylase, putative; Identified by match to protein family HMM; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
     
 0.747
CC_0321
Conserved hypothetical protein; Identified by Glimmer2; putative.
      
 0.731
CC_0652
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.
  
 
 0.561
CC_2670
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.
  
 
 0.553
CC_2971
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.
  
 
 0.553
CC_2323
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.551
flaF
flaF protein; Required for synthesis of the 25 kDa and 27 kDa flagellins and appears to be important for flagellin assembly.
   
  
 0.533
CC_2883
RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.
     
 0.530
CC_0433
Chemotaxis protein CheA; Identified by match to protein family HMM.
  
 
 0.516
CC_0594
Chemotaxis protein CheA; Identified by match to protein family HMM.
  
 
 0.516
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.