STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2883RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily. (189 aa)    
Predicted Functional Partners:
CC_3474
Sensor histidine kinase, putative; Identified by match to protein family HMM.
 
  
 0.910
CC_3477
Response regulator; Identified by match to protein family HMM.
 
  
 0.901
CC_1532
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
  
 0.742
CC_3466
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.730
lovR
Response regulator LovR; Identified by match to protein family HMM.
  
     0.696
CC_2554
Sensor histidine kinase, putative; Identified by match to protein family HMM.
 
  
 0.665
CC_3058
Response regulator/sensor histidine kinase; Identified by match to protein family HMM.
 
  
 0.644
CC_1683
Sensor histidine kinase, putative; Similar to GP:2808506; identified by sequence similarity; putative.
 
   
 0.642
CC_2909
Sensor histidine kinase, putative; Identified by match to protein family HMM.
 
   
 0.625
CC_3560
Response regulator/sensor histidine kinase; Identified by match to protein family HMM.
 
  
 0.611
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.