Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
CC_0237 | CC_2884 | DNA-binding response regulator; Identified by match to protein family HMM. | Sensor histidine kinase; Identified by match to protein family HMM. | 0.796 |
CC_0237 | CC_3219 | DNA-binding response regulator; Identified by match to protein family HMM. | Sensor histidine kinase/response regulator; Identified by match to protein family HMM. | 0.573 |
CC_0237 | CC_3623 | DNA-binding response regulator; Identified by match to protein family HMM. | Sensor histidine kinase/response regulator; Identified by match to protein family HMM. | 0.608 |
CC_0294 | CC_2884 | Phosphate regulon response regulator PhoB; Identified by match to protein family HMM. | Sensor histidine kinase; Identified by match to protein family HMM. | 0.818 |
CC_0294 | CC_3219 | Phosphate regulon response regulator PhoB; Identified by match to protein family HMM. | Sensor histidine kinase/response regulator; Identified by match to protein family HMM. | 0.563 |
CC_0294 | CC_3623 | Phosphate regulon response regulator PhoB; Identified by match to protein family HMM. | Sensor histidine kinase/response regulator; Identified by match to protein family HMM. | 0.616 |
CC_0588 | CC_2884 | Chemotaxis protein CheYI; Identified by match to protein family HMM. | Sensor histidine kinase; Identified by match to protein family HMM. | 0.832 |
CC_0588 | CC_3219 | Chemotaxis protein CheYI; Identified by match to protein family HMM. | Sensor histidine kinase/response regulator; Identified by match to protein family HMM. | 0.767 |
CC_0588 | CC_3623 | Chemotaxis protein CheYI; Identified by match to protein family HMM. | Sensor histidine kinase/response regulator; Identified by match to protein family HMM. | 0.790 |
CC_0596 | CC_2884 | Chemotaxis protein CheYIV; Identified by match to protein family HMM. | Sensor histidine kinase; Identified by match to protein family HMM. | 0.805 |
CC_0596 | CC_3219 | Chemotaxis protein CheYIV; Identified by match to protein family HMM. | Sensor histidine kinase/response regulator; Identified by match to protein family HMM. | 0.621 |
CC_0596 | CC_3623 | Chemotaxis protein CheYIV; Identified by match to protein family HMM. | Sensor histidine kinase/response regulator; Identified by match to protein family HMM. | 0.497 |
CC_1182 | CC_2884 | DNA-binding response regulator; Identified by match to protein family HMM. | Sensor histidine kinase; Identified by match to protein family HMM. | 0.788 |
CC_1182 | CC_3219 | DNA-binding response regulator; Identified by match to protein family HMM. | Sensor histidine kinase/response regulator; Identified by match to protein family HMM. | 0.568 |
CC_1182 | CC_3325 | DNA-binding response regulator; Identified by match to protein family HMM. | DNA-binding response regulator; Identified by match to protein family HMM. | 0.412 |
CC_1182 | CC_3623 | DNA-binding response regulator; Identified by match to protein family HMM. | Sensor histidine kinase/response regulator; Identified by match to protein family HMM. | 0.593 |
CC_1293 | CC_2884 | DNA-binding response regulator; Identified by match to protein family HMM. | Sensor histidine kinase; Identified by match to protein family HMM. | 0.790 |
CC_1293 | CC_3219 | DNA-binding response regulator; Identified by match to protein family HMM. | Sensor histidine kinase/response regulator; Identified by match to protein family HMM. | 0.541 |
CC_1293 | CC_3623 | DNA-binding response regulator; Identified by match to protein family HMM. | Sensor histidine kinase/response regulator; Identified by match to protein family HMM. | 0.557 |
CC_2884 | CC_0237 | Sensor histidine kinase; Identified by match to protein family HMM. | DNA-binding response regulator; Identified by match to protein family HMM. | 0.796 |
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