STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2889Identified by match to protein family HMM. (330 aa)    
Predicted Functional Partners:
CC_2891
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.896
CC_2890
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.820
CC_0468
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.747
CC_2888
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.634
CC_2378
Identified by match to protein family HMM.
 
 
 0.590
hfsE
HfsE; Identified by Glimmer2; putative.
  
  
 0.525
CC_0234
Flagellin modification protein FlmB; Identified by match to PFAM protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.510
per
Perosamine synthetase; Catalyzes the synthesis of GDP-perosamine from GDP-4-keto-6- deoxy-D-mannose and L-glutamate. Can use only L-glutamate as amino donor. In vitro, can also use GDP-4-keto-3,6-dideoxymannose to produce GDP-3-deoxyperosamine. Involved in the formation of S-LPS, which is required for attachment of the protein S-layer to the outer membrane surface.
 
  
 0.490
CC_0634
ABC transporter, ATP-binding subunit; Identified by match to protein family HMM.
 
  
 0.438
kynA
Conserved hypothetical protein; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.
  
   0.420
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.