STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2925Hypothetical protein; Identified by Glimmer2; putative. (375 aa)    
Predicted Functional Partners:
CC_0358
Acid phosphatase; Identified by match to PFAM protein family HMM PF01178.
 
    0.864
CC_2924
TonB-dependent receptor; Identified by match to protein family HMM.
 
     0.702
CC_2149
TonB-dependent receptor; Identified by match to protein family HMM.
  
     0.693
CC_0562
TonB-dependent receptor; Identified by match to protein family HMM.
  
     0.611
CC_0722
TonB-dependent receptor; Identified by match to protein family HMM.
  
     0.604
CC_2832
TonB-dependent receptor; Identified by match to protein family HMM.
  
     0.598
CC_0663
TonB-dependent receptor, putative; Identified by match to protein family HMM.
  
    0.570
CC_0925
OmpA-related protein; Similar to SP:P38370 GB:S64103 PID:402804; identified by sequence similarity; putative.
  
     0.569
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.566
CC_0674
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.553
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.