STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2930Transcriptional regulator, MarR family; Identified by match to protein family HMM. (168 aa)    
Predicted Functional Partners:
CC_2931
petR protein, putative; Identified by match to protein family HMM.
     
 0.782
ilvE
Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
 
     0.645
CC_2932
Sensor histidine kinase; Identified by match to protein family HMM.
  
    0.510
CC_2038
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.458
CC_1163
Acyl carrier protein, putative; Identified by match to PFAM protein family HMM PF00550.
 
  
 0.439
CC_2762
Cytochrome c-type biogenesis protein CycH; Similar to PID:1353873; identified by sequence similarity; putative.
  
     0.438
CC_1977
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.432
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.