Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CC_2941Hypothetical protein; Identified by Glimmer2; putative. (325 aa)    
Predicted Functional Partners:
CC_2940
Hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.999
CC_2942
Pilus assembly protein CpaF; Identified by match to protein family HMM.
 
 
 0.999
CC_2943
Pilus assembly protein CpaE; Identified by match to protein family HMM.
 
 
 0.999
CC_2946
Pilus assembly protein CpaB; Similar to GP:7208424; identified by sequence similarity; putative.
 
 
 0.999
CC_2945
Pilus assembly protein CpaC; Identified by match to PFAM protein family HMM PF00263; Belongs to the bacterial secretin family.
 
 
 0.998
CC_2947
Pilus assembly protein CpaA; Similar to GP:7208423; identified by sequence similarity; putative.
 
  
 0.937
CC_2950
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.935
CC_2948
Pilus subunit protein PilA; Similar to GP:7208422; identified by sequence similarity; putative.
 
  
 0.916
CC_2944
Pilus assembly protein CpaD; Similar to GP:7208426; identified by sequence similarity; putative.
 
  
 0.911
CC_2951
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.823
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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