Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CC_3022Conserved hypothetical protein; Identified by Glimmer2; putative. (232 aa)    
Predicted Functional Partners:
CC_1872
Peptidase, M23/M37 family; Identified by match to protein family HMM.
 
   
 0.849
spmX
Identified by match to protein family HMM.
   
   0.577
bacA
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
0.497
CC_2015
Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM.
      
 0.472
CC_3277
Penicillin-binding protein, 1A family; Identified by match to protein family HMM.
  
   0.469
CC_3021
Cobalamin biosynthesis protein; Similar to GB:M62869 SP:P29933 PID:151168 PID:1926457; identified by sequence similarity; putative.
 
     0.468
CC_1871
Bacterioferritin comigratory protein; Identified by match to PFAM protein family HMM PF00578.
  
  
 0.445
CC_3023
Hypothetical protein; Identified by Glimmer2; putative.
       0.444
mipZ
MipZ; Identified by Glimmer2; putative.
 
     0.433
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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