CC_3029 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CC_3029

Alcohol dehydrogenase class III; Identified by match to protein family HMM. (366 aa)

Predicted Functional Partners:

CC_2515

0.995

CC_2516

0.916

CC_3580

0.916

CC_0419

0.915

CC_1216

0.915

dhmA

0.907

CC_2793

0.900

CC_3030

0.783

CC_3031

0.587

CC_3028

0.573

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC_0419	CC_1216	CC_0419	CC_1216	Aldehyde dehydrogenase; Identified by match to protein family HMM.	Aldehyde dehydrogenase; Identified by match to protein family HMM; Belongs to the aldehyde dehydrogenase family.	0.916
CC_0419	CC_2516	CC_0419	CC_2516	Aldehyde dehydrogenase; Identified by match to protein family HMM.	Alcohol dehydrogenase, class III; Identified by match to protein family HMM; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.916
CC_0419	CC_2793	CC_0419	CC_2793	Aldehyde dehydrogenase; Identified by match to protein family HMM.	Amine oxidase, flavin-containing; Identified by match to PFAM protein family HMM PF01593.	0.903
CC_0419	CC_3029	CC_0419	CC_3029	Aldehyde dehydrogenase; Identified by match to protein family HMM.	Alcohol dehydrogenase class III; Identified by match to protein family HMM.	0.915
CC_0419	CC_3580	CC_0419	CC_3580	Aldehyde dehydrogenase; Identified by match to protein family HMM.	Aldehyde dehydrogenase B; Identified by match to protein family HMM; Belongs to the aldehyde dehydrogenase family.	0.914
CC_1216	CC_0419	CC_1216	CC_0419	Aldehyde dehydrogenase; Identified by match to protein family HMM; Belongs to the aldehyde dehydrogenase family.	Aldehyde dehydrogenase; Identified by match to protein family HMM.	0.916
CC_1216	CC_2516	CC_1216	CC_2516	Aldehyde dehydrogenase; Identified by match to protein family HMM; Belongs to the aldehyde dehydrogenase family.	Alcohol dehydrogenase, class III; Identified by match to protein family HMM; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.915
CC_1216	CC_2793	CC_1216	CC_2793	Aldehyde dehydrogenase; Identified by match to protein family HMM; Belongs to the aldehyde dehydrogenase family.	Amine oxidase, flavin-containing; Identified by match to PFAM protein family HMM PF01593.	0.903
CC_1216	CC_3029	CC_1216	CC_3029	Aldehyde dehydrogenase; Identified by match to protein family HMM; Belongs to the aldehyde dehydrogenase family.	Alcohol dehydrogenase class III; Identified by match to protein family HMM.	0.915
CC_1216	CC_3580	CC_1216	CC_3580	Aldehyde dehydrogenase; Identified by match to protein family HMM; Belongs to the aldehyde dehydrogenase family.	Aldehyde dehydrogenase B; Identified by match to protein family HMM; Belongs to the aldehyde dehydrogenase family.	0.900
CC_2515	CC_2516	CC_2515	CC_2516	Esterase; Serine hydrolase involved in the detoxification of formaldehyde.	Alcohol dehydrogenase, class III; Identified by match to protein family HMM; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.998
CC_2515	CC_3029	CC_2515	CC_3029	Esterase; Serine hydrolase involved in the detoxification of formaldehyde.	Alcohol dehydrogenase class III; Identified by match to protein family HMM.	0.995
CC_2516	CC_0419	CC_2516	CC_0419	Alcohol dehydrogenase, class III; Identified by match to protein family HMM; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	Aldehyde dehydrogenase; Identified by match to protein family HMM.	0.916
CC_2516	CC_1216	CC_2516	CC_1216	Alcohol dehydrogenase, class III; Identified by match to protein family HMM; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	Aldehyde dehydrogenase; Identified by match to protein family HMM; Belongs to the aldehyde dehydrogenase family.	0.915
CC_2516	CC_2515	CC_2516	CC_2515	Alcohol dehydrogenase, class III; Identified by match to protein family HMM; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	Esterase; Serine hydrolase involved in the detoxification of formaldehyde.	0.998
CC_2516	CC_2793	CC_2516	CC_2793	Alcohol dehydrogenase, class III; Identified by match to protein family HMM; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	Amine oxidase, flavin-containing; Identified by match to PFAM protein family HMM PF01593.	0.900
CC_2516	CC_3029	CC_2516	CC_3029	Alcohol dehydrogenase, class III; Identified by match to protein family HMM; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	Alcohol dehydrogenase class III; Identified by match to protein family HMM.	0.916
CC_2516	CC_3580	CC_2516	CC_3580	Alcohol dehydrogenase, class III; Identified by match to protein family HMM; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	Aldehyde dehydrogenase B; Identified by match to protein family HMM; Belongs to the aldehyde dehydrogenase family.	0.918
CC_2516	dhmA	CC_2516	CC_1175	Alcohol dehydrogenase, class III; Identified by match to protein family HMM; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	Haloalkane dehalogenase, putative; Catalyzes hydrolytic cleavage of carbon-halogen bonds in halogenated aliphatic compounds, leading to the formation of the corresponding primary alcohols, halide ions and protons.	0.907
CC_2793	CC_0419	CC_2793	CC_0419	Amine oxidase, flavin-containing; Identified by match to PFAM protein family HMM PF01593.	Aldehyde dehydrogenase; Identified by match to protein family HMM.	0.903