STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3031Phospholipase C; Similar to GB:M30223 SP:P15713 GB:M59304 PID:151496 PID:151498; identified by sequence similarity; putative. (686 aa)    
Predicted Functional Partners:
CC_1733
Aas bifunctional protein, putative; Identified by match to protein family HMM.
   
 
  0.904
CC_1924
Conserved hypothetical protein; Identified by Glimmer2; putative.
     
 0.901
CC_0308
Identified by match to PFAM protein family HMM PF00459.
     
  0.900
suhB
Extragenic suppressor protein SuhB; Identified by match to PFAM protein family HMM PF00459; Belongs to the inositol monophosphatase superfamily.
     
  0.900
CC_2642
Choline dehydrogenase; Identified by match to PFAM protein family HMM PF00732.
   
 
  0.802
CC_0945
Oxidoreductase, GMC family; Identified by match to PFAM protein family HMM PF00732.
   
 
  0.800
CC_3029
Alcohol dehydrogenase class III; Identified by match to protein family HMM.
  
    0.587
CC_3030
Identified by match to protein family HMM.
  
    0.584
CC_0533
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.495
CC_0574
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.476
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.