STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3032Peptidase, M20/M25/M40 family; Identified by match to protein family HMM. (412 aa)    
Predicted Functional Partners:
CC_1556
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.722
CC_0985
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.640
CC_0088
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
    0.632
CC_0122
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.592
CC_1525
Identified by match to PFAM protein family HMM PF00557.
  
 
 0.586
CC_3204
Hydrolase, alpha/beta hydrolase fold family; Identified by match to protein family HMM; Belongs to the AB hydrolase superfamily. MetX family.
  
     0.584
CC_1122
Identified by match to PFAM protein family HMM PF01804.
  
     0.569
CC_0940
Acylase, putative; Similar to GB:D10200 PID:216374 PID:512525; identified by sequence similarity; putative.
  
   
 0.553
CC_1622
Antibiotic hydrolase; Similar to GB:D10200 PID:216374 PID:512525; identified by sequence similarity; putative.
  
   
 0.498
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
   
 
 0.492
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.