Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CC_3039 | CC_3042 | CC_3039 | CC_3042 | Hypothetical protein; Identified by Glimmer2; putative. | Endo-1,4-beta-xylanase; Identified by match to protein family HMM. | 0.452 |
CC_3039 | fliI | CC_3039 | CC_3040 | Hypothetical protein; Identified by Glimmer2; putative. | Flagellum-specific ATP synthase FliI; Probable catalytic subunit of a protein translocase for flagellum-specific export, or a proton translocase involved in local circuits at the flagellum. | 0.594 |
CC_3039 | fliJ | CC_3039 | CC_3041 | Hypothetical protein; Identified by Glimmer2; putative. | FliJ protein; Flagellar protein that affects chemotactic events. Belongs to the FliJ family. | 0.594 |
CC_3042 | CC_3039 | CC_3042 | CC_3039 | Endo-1,4-beta-xylanase; Identified by match to protein family HMM. | Hypothetical protein; Identified by Glimmer2; putative. | 0.452 |
CC_3042 | fliI | CC_3042 | CC_3040 | Endo-1,4-beta-xylanase; Identified by match to protein family HMM. | Flagellum-specific ATP synthase FliI; Probable catalytic subunit of a protein translocase for flagellum-specific export, or a proton translocase involved in local circuits at the flagellum. | 0.584 |
CC_3042 | fliJ | CC_3042 | CC_3041 | Endo-1,4-beta-xylanase; Identified by match to protein family HMM. | FliJ protein; Flagellar protein that affects chemotactic events. Belongs to the FliJ family. | 0.584 |
flbE | fliI | CC_0907 | CC_3040 | flbE protein; Similar to GB:M98855 SP:Q04953 PID:144249; identified by sequence similarity; putative. | Flagellum-specific ATP synthase FliI; Probable catalytic subunit of a protein translocase for flagellum-specific export, or a proton translocase involved in local circuits at the flagellum. | 0.999 |
flbE | fliJ | CC_0907 | CC_3041 | flbE protein; Similar to GB:M98855 SP:Q04953 PID:144249; identified by sequence similarity; putative. | FliJ protein; Flagellar protein that affects chemotactic events. Belongs to the FliJ family. | 0.738 |
fliI | CC_3039 | CC_3040 | CC_3039 | Flagellum-specific ATP synthase FliI; Probable catalytic subunit of a protein translocase for flagellum-specific export, or a proton translocase involved in local circuits at the flagellum. | Hypothetical protein; Identified by Glimmer2; putative. | 0.594 |
fliI | CC_3042 | CC_3040 | CC_3042 | Flagellum-specific ATP synthase FliI; Probable catalytic subunit of a protein translocase for flagellum-specific export, or a proton translocase involved in local circuits at the flagellum. | Endo-1,4-beta-xylanase; Identified by match to protein family HMM. | 0.584 |
fliI | flbE | CC_3040 | CC_0907 | Flagellum-specific ATP synthase FliI; Probable catalytic subunit of a protein translocase for flagellum-specific export, or a proton translocase involved in local circuits at the flagellum. | flbE protein; Similar to GB:M98855 SP:Q04953 PID:144249; identified by sequence similarity; putative. | 0.999 |
fliI | fliJ | CC_3040 | CC_3041 | Flagellum-specific ATP synthase FliI; Probable catalytic subunit of a protein translocase for flagellum-specific export, or a proton translocase involved in local circuits at the flagellum. | FliJ protein; Flagellar protein that affects chemotactic events. Belongs to the FliJ family. | 0.956 |
fliJ | CC_3039 | CC_3041 | CC_3039 | FliJ protein; Flagellar protein that affects chemotactic events. Belongs to the FliJ family. | Hypothetical protein; Identified by Glimmer2; putative. | 0.594 |
fliJ | CC_3042 | CC_3041 | CC_3042 | FliJ protein; Flagellar protein that affects chemotactic events. Belongs to the FliJ family. | Endo-1,4-beta-xylanase; Identified by match to protein family HMM. | 0.584 |
fliJ | flbE | CC_3041 | CC_0907 | FliJ protein; Flagellar protein that affects chemotactic events. Belongs to the FliJ family. | flbE protein; Similar to GB:M98855 SP:Q04953 PID:144249; identified by sequence similarity; putative. | 0.738 |
fliJ | fliI | CC_3041 | CC_3040 | FliJ protein; Flagellar protein that affects chemotactic events. Belongs to the FliJ family. | Flagellum-specific ATP synthase FliI; Probable catalytic subunit of a protein translocase for flagellum-specific export, or a proton translocase involved in local circuits at the flagellum. | 0.956 |