STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
katGCatalase/peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity (By similarity). Important for stationary phase survival; Belongs to the peroxidase family. Peroxidase/catalase subfamily. (737 aa)    
Predicted Functional Partners:
CC_1071
Histidinol-phosphate aminotransferase, putative; Identified by match to protein family HMM.
     
 0.904
hisC1
Histidinol-phosphate aminotransferase; Identified by match to protein family HMM; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
 0.904
hisC2
Histidinol-phosphate aminotransferase; Identified by match to protein family HMM; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
 0.904
CC_1534
Aspartate aminotransferase; Identified by match to protein family HMM.
     
 0.900
phhA
Phenylalanine-4-hydroxylase; Identified by match to protein family HMM.
     
  0.900
sodC
Superoxide dismutase, Cu-Zn; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (By similarity). May function against extracytoplasmic toxic oxygen species; Belongs to the Cu-Zn superoxide dismutase family.
   
 
 0.843
CC_2933
Prephenate dehydratase; Identified by match to PFAM protein family HMM PF00800.
     
  0.800
skgA
Transcriptional regulator SkgA; Regulates the induction of katG (catalase-peroxidase) in stationary phase.
      
 0.753
CC_3612
Conserved hypothetical protein; Identified by Glimmer2; putative.
      
 0.738
CC_2505
Identified by match to protein family HMM; Belongs to the glutaredoxin family. Monothiol subfamily.
   
  
 0.711
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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