CC_3053 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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Cooccurrence

Coexpression

Experiments

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[Homology]

Score

CC_3053

Hypothetical protein; Identified by Glimmer2; putative. (597 aa)

Predicted Functional Partners:

CC_0579

0.524

CC_3052

0.522

CC_2819

0.518

CC_1623

0.507

CC_1099

0.491

CC_3051

0.476

CC_2579

0.432

CC_0983

0.428

CC_3107

0.415

CC_3054

0.407

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CC_0579	CC_2579	TonB-dependent receptor; Similar to GP:9105165; identified by sequence similarity; putative.	Identified by match to protein family HMM.	0.456
CC_0579	CC_3053	TonB-dependent receptor; Similar to GP:9105165; identified by sequence similarity; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.524
CC_0579	CC_3107	TonB-dependent receptor; Similar to GP:9105165; identified by sequence similarity; putative.	Peptidase, M20/M25/M40 family; Identified by match to protein family HMM.	0.464
CC_0983	CC_3053	TonB-dependent receptor; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.428
CC_0983	CC_3107	TonB-dependent receptor; Identified by match to protein family HMM.	Peptidase, M20/M25/M40 family; Identified by match to protein family HMM.	0.490
CC_1099	CC_2579	TonB-dependent receptor; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.535
CC_1099	CC_3053	TonB-dependent receptor; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.491
CC_1099	CC_3107	TonB-dependent receptor; Identified by match to protein family HMM.	Peptidase, M20/M25/M40 family; Identified by match to protein family HMM.	0.556
CC_1623	CC_2579	TonB-dependent receptor; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.563
CC_1623	CC_3053	TonB-dependent receptor; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.507
CC_1623	CC_3107	TonB-dependent receptor; Identified by match to protein family HMM.	Peptidase, M20/M25/M40 family; Identified by match to protein family HMM.	0.666
CC_2579	CC_0579	Identified by match to protein family HMM.	TonB-dependent receptor; Similar to GP:9105165; identified by sequence similarity; putative.	0.456
CC_2579	CC_1099	Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.535
CC_2579	CC_1623	Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.563
CC_2579	CC_2819	Identified by match to protein family HMM.	TonB-dependent receptor, putative; Identified by match to protein family HMM.	0.665
CC_2579	CC_3053	Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.432
CC_2819	CC_2579	TonB-dependent receptor, putative; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.665
CC_2819	CC_3053	TonB-dependent receptor, putative; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.518
CC_2819	CC_3107	TonB-dependent receptor, putative; Identified by match to protein family HMM.	Peptidase, M20/M25/M40 family; Identified by match to protein family HMM.	0.725
CC_3051	CC_3052	Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.541