STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3060Conserved hypothetical protein; Identified by Glimmer2; putative. (171 aa)    
Predicted Functional Partners:
CC_3059
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 0.995
CC_3061
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.960
CC_3062
Thiamine biosynthesis protein ApbE, putative; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
 
    0.904
CC_2927
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.856
CC_3063
Sulfite reductase (NADPH) flavoprotein alpha-component; Identified by match to protein family HMM.
 
    0.805
CC_1775
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.758
CC_2720
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.731
CC_0214
TonB-dependent receptor; Identified by match to protein family HMM.
  
   
 0.563
CC_0815
TonB-dependent receptor, putative; Similar to GP:2281664; identified by sequence similarity; putative.
     
 0.555
CC_0663
TonB-dependent receptor, putative; Identified by match to protein family HMM.
  
   
 0.545
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.