STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylRTranscriptional regulator, LacI family; Identified by match to protein family HMM. (351 aa)    
Predicted Functional Partners:
CC_0448
PTS system, fructose-specific EIIA/HPr/EI components; Identified by match to protein family HMM.
   
 
 0.819
CC_0537
PTS system, fructose-specific EIIA/HPr/EI components; Identified by match to protein family HMM.
   
 
 0.819
CC_3607
Glutamate synthase, large subunit; Identified by match to PFAM protein family HMM PF01645.
   
 
 0.730
CC_1928
Inosine-uridine preferring nucleoside hydrolase; Identified by match to PFAM protein family HMM PF01156.
     
 0.681
CC_2615
Inosine-uridine preferring nucleoside hydrolase; Identified by match to PFAM protein family HMM PF01156.
     
 0.681
CC_3064
Hypothetical protein; Identified by Glimmer2; putative.
       0.549
CC_0859
Sugar ABC transporter, periplasmic sugar-binding protein; Identified by match to protein family HMM.
 
  
 0.519
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.489
CC_0861
Sugar ABC transporter, permease protein; Similar to GB:L10328 SP:P04984 GB:M13169 PID:147514 PID:290600; identified by sequence similarity; putative; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.467
CC_0860
Sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM.
 
  
 0.401
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.