STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3076Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM. (254 aa)    
Predicted Functional Partners:
CC_2966
Short chain dehydrogenase family protein; Identified by match to protein family HMM; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.742
CC_2337
Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM.
 
 
 0.687
CC_3075
Sensor histidine kinase/response regulator; Identified by match to protein family HMM.
   
 
 0.614
CC_2306
Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.573
CC_0299
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 0.541
CC_3077
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.506
CC_1674
Malonyl CoA-acyl carrier protein transacylase; Identified by match to TIGR protein family HMM TIGR00128.
 
 
 0.485
CC_0978
alpha-L-rhamnosidase, putative; Similar to GP:5763989; identified by sequence similarity; putative.
   
 
 0.481
CC_0704
Identified by match to protein family HMM.
 
 0.474
CC_3189
Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.
 
 0.473
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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