STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3081methylmalonyl-CoA mutase, alpha subunit; Identified by match to PFAM protein family HMM PF01642. (662 aa)    
Predicted Functional Partners:
CC_2374
methylmalonyl-CoA mutase, alpha subunit; Identified by match to PFAM protein family HMM PF01642.
 
0.998
CC_2483
LAO transporter binding protein kinase, putative; May have GTPase activity. May also bind and hydrolyze ATP. May function as chaperone (By similarity).
  
 0.996
CC_2373
methylmalonyl-CoA mutase, beta subunit; Identified by match to protein family HMM.
 
 0.994
CC_1933
Lactoylglutathione lyase, putative; Identified by match to protein family HMM.
 
  
 0.978
CC_3087
acyl-CoA dehydrogenase, putative; Identified by match to PFAM protein family HMM PF00441.
 
 
 0.958
CC_2999
Citrate lyase, beta subunit, putative; Similar to SP:O53078; identified by sequence similarity; putative; Belongs to the HpcH/HpaI aldolase family.
  
 0.846
CC_3724
Coenzyme A transferase, putative; Similar to GB:L21902 SP:P38946 PID:347071; identified by sequence similarity; putative.
  
 
 0.839
CC_3085
Alcohol dehydrogenase; Identified by match to protein family HMM.
  
 0.830
CC_1975
propionyl-CoA carboxylase, beta subunit; Identified by match to protein family HMM.
 
 
 0.820
CC_3656
Identified by match to protein family HMM.
 
  
 0.781
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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