Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
CC_0575 | CC_0869 | Beta-lactamase, putative; Similar to GP:2739292; identified by sequence similarity; putative. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.647 |
CC_0575 | CC_3086 | Beta-lactamase, putative; Similar to GP:2739292; identified by sequence similarity; putative. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.728 |
CC_0869 | CC_0575 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Beta-lactamase, putative; Similar to GP:2739292; identified by sequence similarity; putative. | 0.647 |
CC_0869 | CC_3086 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.478 |
CC_1986 | CC_3086 | Identified by match to protein family HMM. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.495 |
CC_3086 | CC_0575 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Beta-lactamase, putative; Similar to GP:2739292; identified by sequence similarity; putative. | 0.728 |
CC_3086 | CC_0869 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.478 |
CC_3086 | CC_1986 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Identified by match to protein family HMM. | 0.495 |
CC_3086 | CC_3087 | Conserved hypothetical protein; Identified by Glimmer2; putative. | acyl-CoA dehydrogenase, putative; Identified by match to PFAM protein family HMM PF00441. | 0.483 |
CC_3087 | CC_3086 | acyl-CoA dehydrogenase, putative; Identified by match to PFAM protein family HMM PF00441. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.483 |