STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3106Threonine aldolase family protein; Similar to GP:3299792; identified by sequence similarity; putative. (369 aa)    
Predicted Functional Partners:
CC_3105
Threonine dehydratase; Identified by match to protein family HMM.
  
  
 0.508
CC_2097
Phosphoserine phosphatase; Identified by match to TIGR protein family HMM TIGR00338.
   
 
  0.500
CC_2369
Hydantoinase/oxoprolinase; Identified by match to protein family HMM.
 
     0.500
gcvH
Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
     
  0.499
CC_0522
Identified by match to protein family HMM.
   
    0.440
CC_3032
Peptidase, M20/M25/M40 family; Identified by match to protein family HMM.
  
     0.402
CC_2032
1-aminocyclopropane-1-carboxylate deaminase; Identified by match to protein family HMM.
 
    0.401
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.