STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3107Peptidase, M20/M25/M40 family; Identified by match to protein family HMM. (430 aa)    
Predicted Functional Partners:
CC_2819
TonB-dependent receptor, putative; Identified by match to protein family HMM.
  
    0.725
CC_2544
Aminopeptidase, putative; Similar to GP:3386478; identified by sequence similarity; putative.
  
    0.679
CC_1623
TonB-dependent receptor; Identified by match to protein family HMM.
  
     0.666
CC_1986
Identified by match to protein family HMM.
 
    0.652
CC_2154
Dipeptidyl peptidase IV; Identified by match to PFAM protein family HMM PF00930.
  
    0.604
CC_0799
Para-nitrobenzyl esterase; Identified by match to protein family HMM; Belongs to the type-B carboxylesterase/lipase family.
 
 0.589
CC_1277
Identified by match to PFAM protein family HMM PF01663.
  
  
  0.570
CC_0925
OmpA-related protein; Similar to SP:P38370 GB:S64103 PID:402804; identified by sequence similarity; putative.
  
    0.567
CC_1099
TonB-dependent receptor; Identified by match to protein family HMM.
  
     0.556
CC_3051
Identified by match to protein family HMM.
  
    0.550
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.