Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CC_3115Conserved hypothetical protein; Identified by Glimmer2; putative. (136 aa)    
Predicted Functional Partners:
CC_3467
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.770
CC_3730
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.726
CC_2345
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0262 family.
 
   
 0.725
CC_1652
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.705
CC_0100
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.668
ctaG
Cytochrome c oxidase assembly protein, putative; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.
 
     0.646
CC_3114
Hypothetical protein; Identified by Glimmer2; putative.
       0.623
CC_0903
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.602
CC_1932
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.597
CC_1366
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.594
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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