STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3121Phytoene dehydrogenase-related protein; Identified by match to PFAM protein family HMM PF02032. (543 aa)    
Predicted Functional Partners:
CC_1987
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.922
CC_3122
Identified by match to protein family HMM.
 
   
 0.833
ubiA
4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
 
  
 0.579
CC_3123
Transcriptional regulator, TetR family; Identified by match to protein family HMM.
 
  
 0.525
CC_1334
Electrotransfer ubiquinone oxidoreductase, putative; Accepts electrons from ETF and reduces ubiquinone.
  
  
 0.519
CC_2069
Geranyltranstransferase; Identified by match to PFAM protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.
  
  
 0.484
CC_3119
Efflux system protein, putative; Identified by match to protein family HMM; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.448
CC_3120
Identified by match to protein family HMM; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.448
CC_0223
Hydrolase, alpha/beta hydrolase fold family; Identified by match to protein family HMM.
 
  
 0.438
CC_1722
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.411
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.