CC_3126 protein (Caulobacter vibrioides CB15)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

CC_3126

Amino acid permease; Identified by match to PFAM protein family HMM PF00324. (433 aa)

Predicted Functional Partners:

CC_3125

0.778

CC_1135

0.727

CC_2285

0.715

CC_2286

0.715

CC_3127

0.581

CC_3124

0.543

CC_3128

0.462

CC_3607

0.412

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CC_1135	CC_3126	Amylosucrase; Identified by match to protein family HMM.	Amino acid permease; Identified by match to PFAM protein family HMM PF00324.	0.727
CC_1135	CC_3607	Amylosucrase; Identified by match to protein family HMM.	Glutamate synthase, large subunit; Identified by match to PFAM protein family HMM PF01645.	0.459
CC_2285	CC_2286	Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.912
CC_2285	CC_3126	Identified by match to protein family HMM.	Amino acid permease; Identified by match to PFAM protein family HMM PF00324.	0.715
CC_2285	CC_3607	Identified by match to protein family HMM.	Glutamate synthase, large subunit; Identified by match to PFAM protein family HMM PF01645.	0.465
CC_2286	CC_2285	Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.912
CC_2286	CC_3126	Identified by match to protein family HMM.	Amino acid permease; Identified by match to PFAM protein family HMM PF00324.	0.715
CC_2286	CC_3607	Identified by match to protein family HMM.	Glutamate synthase, large subunit; Identified by match to PFAM protein family HMM PF01645.	0.465
CC_3124	CC_3125	Hypothetical protein; Identified by Glimmer2; putative.	Xaa-Pro dipeptidase, putative; Identified by match to protein family HMM.	0.543
CC_3124	CC_3126	Hypothetical protein; Identified by Glimmer2; putative.	Amino acid permease; Identified by match to PFAM protein family HMM PF00324.	0.543
CC_3124	CC_3127	Hypothetical protein; Identified by Glimmer2; putative.	TonB-dependent receptor; Identified by match to protein family HMM.	0.421
CC_3125	CC_3124	Xaa-Pro dipeptidase, putative; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.543
CC_3125	CC_3126	Xaa-Pro dipeptidase, putative; Identified by match to protein family HMM.	Amino acid permease; Identified by match to PFAM protein family HMM PF00324.	0.778
CC_3125	CC_3127	Xaa-Pro dipeptidase, putative; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.583
CC_3126	CC_1135	Amino acid permease; Identified by match to PFAM protein family HMM PF00324.	Amylosucrase; Identified by match to protein family HMM.	0.727
CC_3126	CC_2285	Amino acid permease; Identified by match to PFAM protein family HMM PF00324.	Identified by match to protein family HMM.	0.715
CC_3126	CC_2286	Amino acid permease; Identified by match to PFAM protein family HMM PF00324.	Identified by match to protein family HMM.	0.715
CC_3126	CC_3124	Amino acid permease; Identified by match to PFAM protein family HMM PF00324.	Hypothetical protein; Identified by Glimmer2; putative.	0.543
CC_3126	CC_3125	Amino acid permease; Identified by match to PFAM protein family HMM PF00324.	Xaa-Pro dipeptidase, putative; Identified by match to protein family HMM.	0.778
CC_3126	CC_3127	Amino acid permease; Identified by match to PFAM protein family HMM PF00324.	TonB-dependent receptor; Identified by match to protein family HMM.	0.581