Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CC_3129Conserved hypothetical protein; Identified by Glimmer2; putative. (429 aa)    
Predicted Functional Partners:
CC_3141
Aldehyde dehydrogenase; Identified by match to protein family HMM; Belongs to the aldehyde dehydrogenase family.
 
 
 0.924
CC_3130
Identified by match to protein family HMM; Belongs to the glutamine synthetase family.
 
  
 0.923
CC_3133
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.854
CC_3138
Identified by match to protein family HMM; Belongs to the glutamine synthetase family.
 
  
 0.826
CC_3132
Aminotransferase, class III; Identified by match to protein family HMM; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.773
CC_3137
Spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
   
 0.586
CC_3142
Transcriptional regulator, GntR family; Similar to GP:5508817; identified by sequence similarity; putative.
 
    0.582
potA
Spermidine/putrescine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
  
 0.559
CC_3143
Omega-amino acid--pyruvate aminotransferase; Identified by match to protein family HMM; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.559
CC_3128
TPR domain protein; Identified by match to protein family HMM.
       0.553
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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