STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3133Conserved hypothetical protein; Identified by Glimmer2; putative. (226 aa)    
Predicted Functional Partners:
CC_3132
Aminotransferase, class III; Identified by match to protein family HMM; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.912
CC_2746
Dipeptidase; Identified by match to PFAM protein family HMM PF01244.
    0.857
CC_3129
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.855
CC_3138
Identified by match to protein family HMM; Belongs to the glutamine synthetase family.
 
  
 0.834
CC_3130
Identified by match to protein family HMM; Belongs to the glutamine synthetase family.
 
  
 0.805
potA
Spermidine/putrescine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
   
 0.748
CC_3135
Spermidine/putrescine ABC transporter, permease protein; Identified by match to protein family HMM.
 
    0.619
CC_3137
Spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
   
 0.586
CC_3136
Spermidine/putrescine ABC transporter, permease protein; Identified by match to protein family HMM.
 
     0.583
CC_1969
Glutamine synthetase, class I; Identified by match to TIGR protein family HMM TIGR00653.
  
  
 0.464
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.