STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3164Transcriptional regulator, Cro/CI family; Identified by match to protein family HMM. (156 aa)    
Predicted Functional Partners:
CC_0445
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
   
  
 0.749
CC_3270
Transcriptional regulator, Cro/CI family; Identified by match to protein family HMM.
      
 0.732
recO
Conserved hypothetical protein; Involved in DNA repair and RecF pathway recombination.
  
    0.705
CC_3292
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.693
HolA
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.668
CC_1365
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.624
CC_2932
Sensor histidine kinase; Identified by match to protein family HMM.
  
     0.600
CC_0374
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.587
CC_3163
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.580
CC_0075
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.577
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.