Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
CC_0804 | CC_3176 | Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to PFAM protein family HMM PF01558. | 0.501 |
CC_0804 | CC_3177 | Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | Transcriptional regulator, AsnC family; Identified by match to protein family HMM. | 0.427 |
CC_0804 | CC_3607 | Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | Glutamate synthase, large subunit; Identified by match to PFAM protein family HMM PF01645. | 0.947 |
CC_3176 | CC_0804 | Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to PFAM protein family HMM PF01558. | Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.501 |
CC_3176 | CC_3177 | Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to PFAM protein family HMM PF01558. | Transcriptional regulator, AsnC family; Identified by match to protein family HMM. | 0.641 |
CC_3176 | CC_3607 | Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to PFAM protein family HMM PF01558. | Glutamate synthase, large subunit; Identified by match to PFAM protein family HMM PF01645. | 0.489 |
CC_3177 | CC_0804 | Transcriptional regulator, AsnC family; Identified by match to protein family HMM. | Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.427 |
CC_3177 | CC_3176 | Transcriptional regulator, AsnC family; Identified by match to protein family HMM. | Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to PFAM protein family HMM PF01558. | 0.641 |
CC_3177 | CC_3178 | Transcriptional regulator, AsnC family; Identified by match to protein family HMM. | Pirin-related protein; Similar to GP:1907076; identified by sequence similarity; putative; Belongs to the pirin family. | 0.435 |
CC_3177 | CC_3607 | Transcriptional regulator, AsnC family; Identified by match to protein family HMM. | Glutamate synthase, large subunit; Identified by match to PFAM protein family HMM PF01645. | 0.476 |
CC_3178 | CC_3177 | Pirin-related protein; Similar to GP:1907076; identified by sequence similarity; putative; Belongs to the pirin family. | Transcriptional regulator, AsnC family; Identified by match to protein family HMM. | 0.435 |
CC_3607 | CC_0804 | Glutamate synthase, large subunit; Identified by match to PFAM protein family HMM PF01645. | Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.947 |
CC_3607 | CC_3176 | Glutamate synthase, large subunit; Identified by match to PFAM protein family HMM PF01645. | Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to PFAM protein family HMM PF01558. | 0.489 |
CC_3607 | CC_3177 | Glutamate synthase, large subunit; Identified by match to PFAM protein family HMM PF01645. | Transcriptional regulator, AsnC family; Identified by match to protein family HMM. | 0.476 |