STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3214Carbamoyl-phosphate synthase/carboxyl transferase; Identified by match to PFAM protein family HMM PF00289. (1078 aa)    
Predicted Functional Partners:
CC_1829
Urea amidolyase-related protein; Identified by match to PFAM protein family HMM PF00289.
 
0.983
CC_2168
acetyl/propionyl-CoA carboxylase, alpha subunit; Identified by match to PFAM protein family HMM PF00289.
 
0.982
CC_2179
propionyl-CoA carboxylase, alpha subunit; Identified by match to PFAM protein family HMM PF00289.
 
0.982
CC_1936
Biotin protein ligase; Identified by match to protein family HMM.
 
 0.952
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
 
 0.800
CC_2533
4-hydroxyphenylpyruvate dioxygenase; Identified by match to protein family HMM.
  
  
 0.786
CC_1883
acetyl-CoA carboxylase, biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
 
  
 0.760
CC_3189
Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.
 
 
 0.743
accD
acetyl-CoA carboxylase, carboxyl transferase beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA.
  
 0.726
CC_0467
3-hydroxy-3-methylglutarate-CoA lyase; Identified by match to protein family HMM.
 
 
 0.706
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.