STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_3232ExbD/TolR family protein; Similar to PID:1103861 SP:P50599; identified by sequence similarity; putative. (172 aa)    
Predicted Functional Partners:
CC_3233
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM.
 
 
 0.986
CC_3231
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.955
CC_2336
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM.
 
 
 0.928
tolB
tolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
  
 0.918
pal
OmpA family protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 
 0.872
CC_2327
TonB protein, putative; Similar to SP:O34261; identified by sequence similarity; putative.
  
 
 0.805
CC_1876
N-acetylmuramoyl-L-alanine amidase; Identified by match to PFAM protein family HMM PF01520.
      
 0.759
bamA
Outer membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.720
CC_1930
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
    0.681
cpoB
Hypothetical protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
 
  
 0.662
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.