CC_3258 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Experiments

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[Homology]

Score

CC_3258

Chemotaxis protein CheYIII; Identified by match to protein family HMM. (166 aa)

Predicted Functional Partners:

CC_2670

0.849

CC_2971

0.849

CC_3155

0.835

CC_0432

0.801

CC_0437

0.793

CC_1364

0.790

CC_2249

0.784

CC_3259

0.773

CC_0652

0.766

flbE

0.746

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC_0432	CC_0437	CC_0432	CC_0437	Chemotaxis protein CheYI; Identified by match to protein family HMM.	Chemotaxis protein CheYII; Identified by match to protein family HMM.	0.766
CC_0432	CC_0652	CC_0432	CC_0652	Chemotaxis protein CheYI; Identified by match to protein family HMM.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	0.516
CC_0432	CC_2670	CC_0432	CC_2670	Chemotaxis protein CheYI; Identified by match to protein family HMM.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	0.519
CC_0432	CC_2971	CC_0432	CC_2971	Chemotaxis protein CheYI; Identified by match to protein family HMM.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	0.431
CC_0432	CC_3258	CC_0432	CC_3258	Chemotaxis protein CheYI; Identified by match to protein family HMM.	Chemotaxis protein CheYIII; Identified by match to protein family HMM.	0.801
CC_0437	CC_0432	CC_0437	CC_0432	Chemotaxis protein CheYII; Identified by match to protein family HMM.	Chemotaxis protein CheYI; Identified by match to protein family HMM.	0.766
CC_0437	CC_0652	CC_0437	CC_0652	Chemotaxis protein CheYII; Identified by match to protein family HMM.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	0.667
CC_0437	CC_2670	CC_0437	CC_2670	Chemotaxis protein CheYII; Identified by match to protein family HMM.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	0.638
CC_0437	CC_2971	CC_0437	CC_2971	Chemotaxis protein CheYII; Identified by match to protein family HMM.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	0.635
CC_0437	CC_3258	CC_0437	CC_3258	Chemotaxis protein CheYII; Identified by match to protein family HMM.	Chemotaxis protein CheYIII; Identified by match to protein family HMM.	0.793
CC_0652	CC_0432	CC_0652	CC_0432	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	Chemotaxis protein CheYI; Identified by match to protein family HMM.	0.516
CC_0652	CC_0437	CC_0652	CC_0437	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	Chemotaxis protein CheYII; Identified by match to protein family HMM.	0.667
CC_0652	CC_1364	CC_0652	CC_1364	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	Chemotaxis protein CheYIII; Identified by match to protein family HMM.	0.537
CC_0652	CC_2249	CC_0652	CC_2249	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	Chemotaxis protein cheYIII; Identified by match to protein family HMM.	0.480
CC_0652	CC_2670	CC_0652	CC_2670	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	0.973
CC_0652	CC_2971	CC_0652	CC_2971	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	0.974
CC_0652	CC_3155	CC_0652	CC_3155	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	Chemotaxis protein CheYIII; Identified by match to protein family HMM.	0.547
CC_0652	CC_3258	CC_0652	CC_3258	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	Chemotaxis protein CheYIII; Identified by match to protein family HMM.	0.766
CC_1364	CC_0652	CC_1364	CC_0652	Chemotaxis protein CheYIII; Identified by match to protein family HMM.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	0.537
CC_1364	CC_2670	CC_1364	CC_2670	Chemotaxis protein CheYIII; Identified by match to protein family HMM.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	0.609